I´m building an htpc in an antec fusion case and I am wondering what I should do about Raid.
I have 2 x 400 gb samsung disks that are going into the machine.
I was going to split one of the disks into two partitions, 50gb for Windows XP os and 350gb for media. Then I would just create a single partition for the 2nd one also for media.
My question is should I think things differently and choose a raid setup? What are the benefits?
I don´t want to loose storage space for backup reasons as I will manually backup the files that I need to own to an external hdd.
Your source for everything home theater & HTPC related

).
For what reasons did you begin to consider raid? At the end-user level, raid is generally used for two things: extra speed (although, this is debatable) and data redundancy. If the computer's use is for an HTPC, you should be looking for reliability, not speed (striping, overclocking, etc.).
First off, I would highly recommend not putting your OS or applications on a raid array. It makes recoveries and upgrades much more difficult and sometimes impossible, especially if you're going to use motherboard-based raid.
Second, if you intend to back things up yourself then you probably don't even need raid. The "hassle" will outweigh the benefits.
Server: WHS, SuperMicro dual Xeon X7DWE, 1 x Xeon L5410, Thermalright HR-01, 4GB Crucial ECC, 8 port PCI-X SATA, 4 port RocketRAID 2300, 5x1 PortMultiplier, Corsair HX1000W PSU, Lian-Li PC343B case [blog]
Storage: 2 x Addonics 5-in-3 bays, 13TB
Client: SageTV 7, Windows 7 64-bit, Foxconn G9657MA-8EKRS2H, Core2Duo E6600, Zalman CNPS7500, 2GB Corsair, 320GB, HIS ATI 4650, Antec Fusion [blog]
Tuners: 2 x HD-PVR (serial control), 2 x HDHR, USB-UIRT